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digest
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This is the complete list of members for digest::Syncmer< P, T >, including all inherited members.
| append_seq(const char *seq, size_t len) | digest::Digester< P > | inline |
| append_seq(const std::string &seq) | digest::Digester< P > | inline |
| Digester(const char *seq, size_t len, unsigned k, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::Digester< P > | inline |
| Digester(const std::string &seq, unsigned k, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::Digester< P > | inline |
| get_chash() | digest::Digester< P > | inline |
| get_ds_size() | digest::WindowMin< P, T > | inline |
| get_fhash() | digest::Digester< P > | inline |
| get_is_minimized() | digest::WindowMin< P, T > | inline |
| get_is_valid_hash() | digest::Digester< P > | inline |
| get_k() | digest::Digester< P > | inline |
| get_large_wind_kmer_am() | digest::WindowMin< P, T > | inline |
| get_len() | digest::Digester< P > | inline |
| get_minimized_h() | digest::Digester< P > | inline |
| get_pos() | digest::Digester< P > | inline |
| get_rhash() | digest::Digester< P > | inline |
| get_sequence() | digest::Digester< P > | inline |
| new_seq(const char *seq, size_t len, size_t start) override | digest::WindowMin< P, T > | inlinevirtual |
| new_seq(const std::string &seq, size_t pos) override | digest::WindowMin< P, T > | inlinevirtual |
| roll_minimizer(unsigned amount, std::vector< uint32_t > &vec) override | digest::Syncmer< P, T > | inlinevirtual |
| roll_minimizer(unsigned amount, std::vector< std::pair< uint32_t, uint32_t > > &vec) override | digest::Syncmer< P, T > | inlinevirtual |
| roll_one() | digest::Digester< P > | inline |
| Syncmer(const char *seq, size_t len, unsigned k, unsigned large_window, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::Syncmer< P, T > | inline |
| Syncmer(const std::string &seq, unsigned k, unsigned large_window, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::Syncmer< P, T > | inline |
| WindowMin(const char *seq, size_t len, unsigned k, unsigned large_window, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::WindowMin< P, T > | inline |
| WindowMin(const std::string &seq, unsigned k, unsigned large_window, size_t start=0, MinimizedHashType minimized_h=MinimizedHashType::CANON) | digest::WindowMin< P, T > | inline |
1.9.8